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Snakemake for Bioinformatics

Snakemake for Bioinformatics
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Snakemake for Bioinformatics

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EPISODES

Summary and Setup

1. Running commands with Snakemake

2. Placeholders and wildcards

3. Chaining rules

4. How Snakemake plans its jobs

5. Processing lists of inputs

6. Handling awkward programs

7. Finishing the basic workflow

8. Configuring workflows

9. Optimising workflow performance

10. Conda integration

11. Constructing a whole new workflow

12. Cleaning up

13. Robust quoting in Snakefiles

Key Points
Glossary
Learner Profiles
Discussion
Glossary

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Discussion

Last updated on 2024-02-22 | Edit this page

For active discussions, see the open issues in GitHub.

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