Skip to main content
Beta
This lesson is in the beta phase, which means that it is ready for teaching by instructors outside of the original author team.
Instructor View
Learner View
Menu
Snakemake for Bioinformatics
Snakemake for Bioinformatics
Key Points
Instructor Notes
Extract All Images
More
Discussion
Glossary
Search the All In One page
Snakemake for Bioinformatics
Instructor View
Learner View
EPISODES
Summary and Schedule
1. Running commands with Snakemake
2. Placeholders and wildcards
3. Chaining rules
4. How Snakemake plans its jobs
5. Processing lists of inputs
6. Handling awkward programs
7. Finishing the basic workflow
8. Configuring workflows
9. Optimising workflow performance
10. Conda integration
11. Constructing a whole new workflow
12. Cleaning up
13. Robust quoting in Snakefiles
RESOURCES
Key Points
Instructor Notes
Extract All Images
Discussion
Glossary
See all in one page
Previous
Next
Home
Home
Discussion
Last updated on 2024-02-22 |
Edit this page
Expand All Solutions
For active discussions, see the
open issues in GitHub
.
Previous
Next
Home
Home
Back
To Top