For Windows users: Install git for windows following: Git for Windows. Install Anaconda following: Python.
Use anaconda to install the following modules:
conda install -y dask[complete]
conda install -y memory_profiler
conda install -y matplotlib
conda install -y numba
conda install -y python-graphviz
conda install -y nltk
conda install -y jupyterlab
FIXME: how to add snakemake? It’s in bioconda. Options:
- add bioconda as a low priority channel:
conda config --append channels bioconda - use pip for snakemake
FIXME: should pip/poetry be mentioned as an alternative?