Glossary

Key Points

Introduction to Topological Data Analysis	TDA describes data forms. Betti numbers allows us to find conected components and 1-holes in data sets.
Computational Tools for TDA	GUDHI is a TDA tool GUDHI uses simplextree objects to efficiently store simplicial complexes GUDHI allows creating simplicial complexes from datasets, distance matrices, simulated data, and manually
Detecting horizontal gene transfer	Horizontal Gene Transfer (HGT) is a phenomenon where an organism transfers genetic material to another one that is not its descendant. 1-holes can detect HGT.
Persistence Simplices gives rise to Gene Families	Pangenomes can be described using TDA Persistence simplices are related to the gene families of a Pangenome Persistence simplices can be used to find some funtional families
Other Resources	Giotto-TDA and tdaverse are other resources to learn TDA

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