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Carpentries Incubator Pre-Alpha This lesson is in the pre-alpha phase, which means that it is in early development, but has not yet been taught.

    Carpentries Incubator
    HPC Workflow Management with Snakemake
    • HPC Workflow Management with Snakemake
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    • Instructor Notes
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    HPC Workflow Management with Snakemake
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    Summary and Schedule
    1. Running commands with Snakemake
    2. Running Snakemake on the cluster
    3. Placeholders
    4. MPI applications and Snakemake
    5. Chaining rules
    6. Processing lists of inputs

    • Key Points
    • Instructor Notes
    • Extract All Images

    • Reference

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    Instructor Notes

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    Running commands with Snakemake


    Running Snakemake on the cluster


    Placeholders


    MPI applications and Snakemake


    Chaining rules


    Processing lists of inputs



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    Template licensed under CC-BY 4.0 by The Carpentries

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