Overview
Teaching: min
Exercises: minQuestions
Objectives
Exercise: Calculate alpha diversity in sample(s) using Observed OTUs Exercise: Calculate with different metrics: Chao1, FaithPD, Simpson, ObservedOTUs… Exercise: Plot the results in a meaningful manner (e.g., violin plots) and interpret the results Bonus Exercise: Look at the correlation between metrics; how well are they correlated
Exercise: Use a metric that requires singletons on data that has no singletons. Note lack of warning, and how results change (e.g., if filtered out singletons)
Key Points