Before we start


From the scanner to our computer


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Figure 6

dicom-to-nifti

Anatomy of a NIfTI


Figure 1

t1_data contains 3 dimensions. You can think of the data as a 3D version of a picture (more accurately, a volume).


Figure 2

While typical 2D pictures are made out of squares called pixels, a 3D MR image is made up of 3D cubes called voxels.
What about the how big each dimension is (shape)?


Figure 3

From left to right: sagittal, coronal and axial slices.


Figure 4


Data organization with BIDS


Exploring open MRI datasets


BIDS derivatives


Figure 1