This lesson is in the early stages of development (Alpha version)

BIDS derivatives

Overview

Teaching: 30 min
Exercises: 15 min
Questions
Objectives

BIDS Apps are containerized applications that run on BIDS data structures.

Some examples include:

They rely on 2 technologies for container computing:

Building a singularity container is as easy as:

singularity build mriqc-0.16.1.simg docker://poldracklab/mriqc:0.16.1`

To run the container:

singularity run --cleanenv \
  -B bids_folder:/data \
  mriqc-0.16.1.simg \
  /data /data/derivatives participant

Key Points